Biomolecules, Vol. 16, Pages 282: Genome-Wide Association Study of Gross Hair Weight and Hair Length Traits in Different Body Regions of Tianzhu White Yak
Biomolecules doi: 10.3390/biom16020282
Authors:
Yicheng Liu
Xuedong Qi
Yongfu La
Xiaoming Ma
Wenwen Ren
Guowu Yang
Zhenyu Zhang
Min Chu
Xiaoyun Wu
Xian Guo
Shaobin Li
Wanzhen Qi
Chunnian Liang
This study systematically measured gross hair weight and hair length traits across five body regions of 759 Tianzhu White Yak individuals. The BSL trait exhibited moderate heritability, while the BL trait demonstrated high heritability (h2 = 0.450). All other traits showed low heritability. GWASs were conducted using whole-genome resequencing data comprising 22,566,255 high-quality SNP loci. The MLM model identified 519 genome-wide significant loci and 767 chromosome-wide significant loci. Chromosome 6 harbored the highest number of significant SNP loci, while the remaining significant loci were distributed across multiple autosomes. Strong long-range linkage disequilibrium (r2 > 0.7) was observed between numerous significant SNPs on chromosome 6 associated with Gw and HL traits. A total of 73 candidate genes were annotated, including FGF5, CFAP299, and PRDM8. Functional enrichment analysis based on the GO and KEGG databases revealed significant enrichment in cytoplasm and the MAPK signaling pathway. Sanger sequencing results revealed that mutations in the FGF5, CFAP299, PRDM8, ANTXR2, and GPHB5 genes significantly affected the Gw, HL, and BSL traits of Tianzhu White Yak (p < 0.01). Linkage disequilibrium analysis indicated strong linkage disequilibrium (r2 > 0.6) among Sanger-sequenced SNP loci on the same chromosome. From a biological perspective, multiple candidate genes such as FGF5 and CFAP299 are involved in hair follicle cycle regulation, cell proliferation, and metabolic control, suggesting its potential role in hair follicle development and hair shaft growth. This study identifies candidate loci and genes for gross hair weight and hair length traits in Tianzhu White Yak, contributing to elucidating the genetic mechanisms underlying hair production performance.
Source link
Yicheng Liu www.mdpi.com
